Bone is constantly broken down by cells called osteoclasts and rebuilt by other cells. Alendronate binds to bone mineral and gathers where bone is being broken down, right under the osteoclasts. There it stops the osteoclasts from working, though they still reach and attach to the bone. Fewer spots of bone are remodeled at any time, and at those spots more bone is laid down than removed, so bone mass slowly builds.
Lab signs of slower bone breakdown show up within about a month, but bone density may take 3 months or longer to start rising. Once covered by new bone it stops acting, so it has to be taken steadily to reach new sites of breakdown. Very little of each dose is absorbed, and food, coffee, or juice cut that even more, which is why it is taken with plain water on an empty stomach. It can irritate the lining of the esophagus, the tube from the mouth to the stomach, and lying down after a dose or not drinking enough water raises the risk of serious sores there.